PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000343G0830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 218aa    MW: 22895.5 Da    PI: 5.6396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000343G0830genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1852101255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PH01000343G0830  52 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 101
                      69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-3752115IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2252110IPR016177DNA-binding domain
PROSITE profilePS5103222.99852109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3252110IPR001471AP2/ERF domain
PfamPF008471.8E-1252101IPR001471AP2/ERF domain
PRINTSPR003679.3E-115364IPR001471AP2/ERF domain
CDDcd000182.46E-3153111No hitNo description
PRINTSPR003679.3E-117591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGAMDDCSSG SEPTTSSSVE APASPPSPTA ATASSSDAAK KKRPRKDGHH PTYRGVRMRS  60
WGKWVSEIRE PRKKSRIWLG TFATAEMAAR AHDVAALAIK GRAAHLNFPD LAHELPRPAT  120
SAPKDVQAAA ALAAAADLPT YANAGVKNPD PSDASAGSAS PPPDTADEAL FDLPDLLLDL  180
RYGPPSCQLS CASSWDDDVA FTGAGVFRLE EPLLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1548109363ATERF1
3gcc_A8e-1548109363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624298.11e-81PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ73e-53ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLQ3T5P21e-108Q3T5P2_HORVD; HvCBF7
STRINGMLOC_3095.11e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-44ERF family protein